rs48899276 SNP Detail

Summary

• ID
  rs48899276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156075444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA ACCCAGAGAT TTGCCTGCCT
  Y
  TGTAAATTCT TATCTATGCA AGCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148124139	ENSMUSSNP4177849	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321444375	CHEV_4_155365096	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48899276					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156075444 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	within coordinates
Cpgi15496	CpG island 15496	489 bp proximal
Rr377473	regulatory region 377473	1230 bp upstream
Rr606627	regulatory region 606627	1589 bp distal
Rr606628	regulatory region 606628	458 bp distal
Rr606629	regulatory region 606629	354 bp proximal
Rr606630	regulatory region 606630	1587 bp proximal
Rr606631	regulatory region 606631	1652 bp proximal
Rr606632	regulatory region 606632	1663 bp proximal
Rr606633	regulatory region 606633	1905 bp proximal
Sdf4	stromal cell derived factor 4	1885 bp upstream
Tssr1404	transcription start site region 1404	1952 bp upstream
Tssr40748	transcription start site region 40748	1413 bp upstream
Tssr44987	transcription start site region 44987	1344 bp downstream
Tssr44988	transcription start site region 44988	1617 bp downstream