rs48899525 SNP Detail

Summary

• ID
  rs48899525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180074893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTTACC TCTCTGACTG
  GACCTACTAT AAAGATACCC TCTGTCCTCA CAGAGCCCCC AGAAGCTGCC TCTCGGGGTC
  TAGCAGACAT TAGGAGTGGG AAGACAGCTG CAGAATACCA CAGGCACAAG AGGGAGGTGG
  AGAGGACCAG GCGCTCCGTC TCTTGGGTCT TGAGGGCTGA GAAGGACAGG GCATGGGCCA
  R
  AAAGGTATAT GAGCTGTGAC AGACAGAGAC AGAACATTCT GGAAAGATGT AACTATTCAA
  GTATTATGAA CAGGATGGGT ACACAACACC ATGTTGTCTC AATATGATGG TGAGATCAGG
  GGACCTGCTA GGGTAGGCCA TCCCGGGAAA GGGTCTGAGC ATCTGGCCAA GGGGAAGGGA
  GTGTAATTCA GCCTAGGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146378708	ENSMUSSNP5287536	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48899525					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180074893 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr424422	regulatory region 424422			1233 bp distal
Rr424423	regulatory region 424423			561 bp proximal
Rr424424	regulatory region 424424			812 bp proximal
Rr424425	regulatory region 424425			1547 bp proximal
Tssr15530	transcription start site region 15530			1417 bp upstream
Tssr15531	transcription start site region 15531			1373 bp upstream