rs48900168 SNP Detail

Summary

• ID
  rs48900168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63328868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA CTGAGTCCCC AAAGGTTGAG
  Y
  TTCACGCCCC CCTGGAGCTC CTGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146443760	ENSMUSSNP6433345	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48900168					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63328868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	within coordinates
Gm57078	predicted gene, 57078	within coordinates
Rr398307	regulatory region 398307	214 bp downstream
Rr398308	regulatory region 398308	6 bp upstream
Rr593544	regulatory region 593544	1404 bp distal
Rr593545	regulatory region 593545	29 bp proximal
Tssr37559	transcription start site region 37559	1004 bp downstream
Tssr42046	transcription start site region 42046	627 bp upstream
Tssr42047	transcription start site region 42047	607 bp upstream
Tssr42048	transcription start site region 42048	419 bp upstream
Tssr42049	transcription start site region 42049	400 bp upstream
Tssr42050	transcription start site region 42050	52 bp downstream
Tssr42051	transcription start site region 42051	74 bp downstream
Tssr42052	transcription start site region 42052	114 bp downstream