rs48902066 SNP Detail

Summary

• ID
  rs48902066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:21350016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAGTGT TGGGGCTATA
  CCTGGAAACA CCGTGCTGTC CCTTTCCTGT GTGAAGAGCA GAGTCATCGT ATGGCAGTGA
  GTGCAGCCCC AAATACCACC AAGTGGTAAG ACACAGGAAG GAGGTTATGG GCTGCATGGC
  TGCATGGACT CTTAGAGAAC TGGTACATAA AGCAATTCTC AAAGTGTTTT TCCTCATTTG
  Y
  TTTAAATCTT CAGGTCCTTT TAGAATTGCT GCAGGCCGGA GGCATAGTTC AATTTGAAGA
  GAGTCGGCTC ATCCGCATGG CAGAAAAGGC AGAATTGTGA GCTGTTTTGA AGCTGTATAT
  TAATTTTCCG TAGTTCTGTT ATTCTCTAAC ATGAAACCTA GTTTATTTTG CATCTCTGCT
  ATGCTAACTA AGAAAGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63676834	NES17069186	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48902066					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63676834	NES17069186	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:21350016 () rs orientation: forward

Symbol	Name	Function Class
D16Mit208	DNA Segment, Chr 16 Massachusetts Institute of Technology 208	670 bp distal
Vps8	VPS8 CORVET complex subunit	within coordinates