rs48902474 SNP Detail

Summary

• ID
  rs48902474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181668180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTTTAA AAGGCCCTGG
  AACAGATTTA TTCTGAACTA TCAGAAGCAT CCAATCCTTG CCATTCATCC CATCCAGGTA
  CTAACCACGT CTGATCCTGT TTGGCTTCAG AGATCTGATG AAATCCAGAG GATTAGAATG
  GTATGGCCCT AGACTCACTG CTGTTTCTCT ACTGCATCTT GAAGACACCA CATTAACTAT
  R
  AGTCCAACAA AGAACACAAG TCAAAGTTTA AAAAAAAAAA AATTCTATTA CTTATTAAAT
  AGTAGGTAAT ACATAATCAA GGCACCCAGT AGATATTTGA GCCTCAATTT TTCAAAAATA
  TGCCTATAAT GTGTAATATA AAATTTGATC CCCAGAAAAA AAGGGAGGAA AAGAACTGAG
  ACTAGCAGGG CATGGTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146399283	ENSMUSSNP783577	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48902474					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181668180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1138	CpG island 1138	877 bp proximal
Gm55354	predicted gene, 55354	47 bp upstream
Lbr	lamin B receptor	within coordinates
Rr396678	regulatory region 396678	1606 bp upstream
Rr424801	regulatory region 424801	359 bp distal
Rr424802	regulatory region 424802	1 bp distal
Rr424803	regulatory region 424803	419 bp proximal
Rr424804	regulatory region 424804	1754 bp proximal
Rr424805	regulatory region 424805	1951 bp proximal
Tssr10531	transcription start site region 10531	1900 bp upstream
Tssr10532	transcription start site region 10532	1936 bp upstream
Tssr15588	transcription start site region 15588	398 bp downstream
Tssr15589	transcription start site region 15589	1692 bp downstream
Tssr15590	transcription start site region 15590	1719 bp downstream