rs48903798 SNP Detail

Summary

• ID
  rs48903798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30840169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAACATC ACTGAGCCCA
  GCCCACACCC AGTCCTGGGA GCTCTGAAGT AGAGATGGTC CCCTTTGCCA CACACAACTG
  CTTGGTGATG AGAATGGGAC TGAAGGGCCC TCCTCTGGCC TTGTCCTCTT TGGGGATGCT
  GCCCCATCAG GCTCCTGAGA AGAGGGAGGT CTTTCGCAGT CTTACTTTTG AGGATGGCCC
  R
  TTTGGAGTTG CCCTGGGGGA TGAGTGCCGC AGAGAGGGCG AGGCACACAG CCGAGCAGGG
  ATGGGGAAGG GTGTCTCAGG GGTATCAGCA GTGTTGACGG ATAGGCGTAA TGACTGCCCA
  CCCTATTCCC TTCCTCCCTG CTAAGTATTG CCTCACATGG AGGCTTCCCT CAGCATCGGG
  GGCCAGTCTG TACCAATCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60989118	NES16134698	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48903798					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989118	NES16134698	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30840169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18838	CpG island 18838	1943 bp proximal
Gramd1a	GRAM domain containing 1A	within coordinates
Rr645030	regulatory region 645030	484 bp distal
Rr645031	regulatory region 645031	139 bp distal
Tssr71945	transcription start site region 71945	1883 bp downstream