rs48904553 SNP Detail

Summary

• ID
  rs48904553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24826397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGCACCA TCCCCCACTT
  TCAGCCTCCT CTAACTAAAA CCTTAGGATT CTGAGCCTGA GCCTGCTCCA GAACAAGCCT
  GATGGATCCA TCTGTTTGCC CATTTGCTTT GGGAATCTTC ACTACAAAAG TCCCCTACAG
  ACTTAGGATG AGGTCTCCTT GTCACCTGAG GTGCTGCAGC GAGAAAGGAA ACGGGAGTCC
  Y
  AACTTTTCCG AGACTCCCAG TATCGATGTG GGCATGCCCT CACTGTGCTT GTTTCAAGGA
  TATTGGTGGC AGGTGACTTG TTCACAGTCA CCATGTGGCT CTAACACTCG GAGCCAAGCT
  TGTCTTACTC AGCTGGCAAA GCCCTATACC ATTTTTTTTC CTGAGCTGGG CCCAGTTGTG
  TGTGTGTGTG TGTGTGTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148097873	ENSMUSSNP26048	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48904553					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24826397 () rs orientation: forward

Symbol	Name	Function Class
Gm71653	predicted gene, 71653	538 bp upstream
Rr608374	regulatory region 608374	933 bp distal
Rr608375	regulatory region 608375	1494 bp proximal
Smarcd3	SWI/SNF related BAF chromatin remodeling complex subunit D3	within coordinates
Tssr50355	transcription start site region 50355	1247 bp downstream
Tssr50356	transcription start site region 50356	1260 bp downstream