rs48904827 SNP Detail

Summary

• ID
  rs48904827
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122518971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT CCAAAGGCCG TGTGGCTGCT
  T
  ATTCCATCCC CTCTGTGACG TTCTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145806712	ENSMUSSNP227372	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48904827					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122518971 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	1149 bp downstream
Rr671926	regulatory region 671926	within coordinates
Tssr79823	transcription start site region 79823	99 bp upstream
Tssr79824	transcription start site region 79824	217 bp upstream
Tssr79825	transcription start site region 79825	246 bp upstream
Tssr83237	transcription start site region 83237	43 bp upstream
Tssr83238	transcription start site region 83238	22 bp upstream
Tssr83239	transcription start site region 83239	within coordinates
Tssr83240	transcription start site region 83240	30 bp downstream
Tssr83241	transcription start site region 83241	103 bp downstream