rs48905062 SNP Detail

Summary

• ID
  rs48905062
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8857376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATACATG CATATACACA
  ATACATATAA ACACACATCC ACATCCACAA ACACACACAC GTACACATAT ACACAAACAC
  ACACACTTCC ACACATACAT ATGTACCTAT AATAATAAAC AATAATAAAT AAAAAATGCC
  AAAAATTAAA ATCACATTCG TATAGACTAT TGGTAACTCA AGTCCAACTG TAGACTTGAG
  S
  AAAATGTTGG AGAGAAAGTT GGGTGGTTAA AAGTTATGCT GCTCTTGCAG ATGACCTGAG
  TTTGGTTCCC AGCACCCACA TCAGGTAACT CACAACCATA ATAACTTCAG CTCCAGGGGA
  TCCTCTTCTG GACTGCACAG ACCAACACAC ATACATGTCC ACATATCCAT ATATACATAA
  CCACATAGTC ACATAACTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52141020	NES15241436	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48905062					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52141020	NES15241436	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8857376 () rs orientation: forward

Symbol	Name	Function Class
Rr223851	regulatory region 223851	1225 bp proximal
Rr223852	regulatory region 223852	1702 bp proximal