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rs48905865 SNP Detail
Summary
  • ID
    rs48905865
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:140426394 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCAGTTCTT CCGAGACCCT
    CCTGGTGCTG GATCACCAGT CCTCCCCGAT CCCCAGATCT CCATCAGCCA GCAGAGATGG
    AGACCTCGCA GAGAAGTTTC CAAAGTCTCT TAGAACTGCT TCCCCCACCC CAAAAGAACT
    ACATCCCACC TAGGCAGTAC ATGTGCACAC AGCCCCTCCC CAGGGTGCTA GGAGAGGTGG
    R
    TCACCATGCT CAGGAGTCTG TCTCCTCCAC TGGTGTGCAC AGCACTGTCT GCCGCTGGGA
    CTGGGGGATC CGGTTGTTGG TTACCAGGTC TCCTGGTCCC CACACATCTC TCTTTCAGGT
    GCAAGTGCTA GATGCTCAAG AGGACACATA AGCAGACCCG AAACACGGCT TGACTTCCAT
    GAGCGACAGG ACCAGCCCTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss61072236 NES16047742 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G A G A A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs48905865 SNP G G G G G G G G G G A G A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61072236 NES16047742 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:140426394 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
C330022C24Rik RIKEN cDNA C330022C24 gene 792 bp upstream
Cimap1a ciliary microtubule associated protein 1A 1435 bp upstream
Gm45785 predicted gene 45785 within coordinates
Rr400701 regulatory region 400701 1342 bp downstream
Rr657754 regulatory region 657754 1465 bp distal
Rr657755 regulatory region 657755 924 bp distal
Rr657756 regulatory region 657756 1063 bp distal
Rr657757 regulatory region 657757 702 bp distal
Rr657758 regulatory region 657758 528 bp distal
Rr657759 regulatory region 657759 1434 bp proximal
Scgb1c1 secretoglobin, family 1C, member 1 within coordinates
Tssr69847 transcription start site region 69847 914 bp downstream
Tssr69848 transcription start site region 69848 1273 bp upstream
Tssr69849 transcription start site region 69849 1289 bp upstream
Tssr69850 transcription start site region 69850 1303 bp upstream
Tssr69851 transcription start site region 69851 1320 bp upstream
Tssr69852 transcription start site region 69852 1335 bp upstream
Tssr69853 transcription start site region 69853 1362 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory