rs48906108 SNP Detail

Summary

• ID
  rs48906108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29895592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCTAAAT ACTCTCCACT
  CACTAGGTTG TGTGTCCTCG AAGCAGGCCT GTGGGATAGG TCTGTTATTG TCCCCATTCT
  ATGTATAAGT AAACTGAGGT TAAACAACCA GTCTGCTTTA CCTGTTCAAA GAATCTCCGA
  TAACTTAATA TGATAATCAG TCAAATAAGA TCTCAGCAGA CAAGACCGTA ATTGCACTAA
  Y
  GCCACCTAAG GGCTTGCTGG GACCAGGCCA GGTAATCATT GCTCAAACCT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GAAGCAAGAT TTAACCTGTC
  GAAACCGGAA ACTCTAAAAG GCGGGAGCAC AGAGGGTGGC GACCCAGGCC TAAGCCTTAG
  CGGATAAATC ATTTGGTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60991863	NES16142284	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48906108					SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991863	NES16142284	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29895592 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18783	CpG island 18783	851 bp distal
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	470 bp upstream
Rr400233	regulatory region 400233	831 bp downstream
Tssr71706	transcription start site region 71706	1136 bp upstream
Tssr71707	transcription start site region 71707	1124 bp upstream
Tssr71708	transcription start site region 71708	1077 bp upstream
Tssr71709	transcription start site region 71709	942 bp upstream
Tssr71710	transcription start site region 71710	598 bp upstream