rs48906340 SNP Detail

Summary

• ID
  rs48906340
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84513347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCGACGC AGCAGGCGTC
  CCTGGAACAC GCCACCTCCT CAGCTATCAT CCCACCCTAA CCACCCACAC AACCCAGACG
  TGGCCAGCAG GCTGGGTCTT CCCGGATGCC CAACTCTACT AGCTGACCTC TTGGCATCAC
  AGATGGATTA TTCCTGACCA ACATTTCCAG TCATTCCAAA AATTCTTGGA GTATGAGTTA
  M
  GGCTGGGTGT GTTTGGAGTG GAGAGTAAGT AATGAGGAAG TTTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG AGTAAAGGAA GGGCAGCCCA ATTTCGTGCA
  CAGAAGACTA AAGGGAATGA AGCACTGAAT TACATAGGAT GACCTGGGCA CAGACCAGCC
  CCTGAAGCCA TTGGCTGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss60500097	NES16522426	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs48906340					SNP	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500097	NES16522426	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84513347 () rs orientation: forward

Symbol	Name	Function Class
Mir155hg	Mir155 host gene (non-protein coding)	1214 bp downstream
Mrpl39	mitochondrial ribosomal protein L39	1721 bp downstream
Rr518523	regulatory region 518523	264 bp distal
Tssr139174	transcription start site region 139174	1471 bp downstream
Tssr139175	transcription start site region 139175	1372 bp downstream
Tssr139176	transcription start site region 139176	839 bp downstream