rs48907372 SNP Detail

Summary

• ID
  rs48907372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137720549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTGC CCTTCGGTCT CTCCCTCAGC
  Y
  CCGCACCGCG CCGCGGAGAT CCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147628340	ENSMUSSNP5957447	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321369517	CHEV_4_137549153	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48907372					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137720549 () rs orientation: forward

Symbol	Name	Function Class
BE691133	expressed sequence BE691133	within coordinates
Cpgi15142	CpG island 15142	within coordinates
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Gm70263	predicted gene, 70263	1281 bp downstream
Rr100351	regulatory region 100351	within coordinates
Rr398623	regulatory region 398623	59 bp upstream
Tssr39803	transcription start site region 39803	202 bp downstream
Tssr39804	transcription start site region 39804	163 bp downstream
Tssr39805	transcription start site region 39805	207 bp upstream
Tssr39806	transcription start site region 39806	240 bp upstream
Tssr39807	transcription start site region 39807	443 bp upstream
Tssr39808	transcription start site region 39808	682 bp upstream
Tssr39809	transcription start site region 39809	793 bp upstream
Tssr39810	transcription start site region 39810	1533 bp upstream
Tssr44154	transcription start site region 44154	46 bp downstream
Tssr44155	transcription start site region 44155	1474 bp downstream