rs48908210 SNP Detail

Summary

• ID
  rs48908210
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40759508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGACCCA GTCCTGAGAT
  GTGTTTGAAG CCTCGAGGAC CTTCACTCCC GGCGTACAGT GCGGCGAGGA GCTCGCGGCA
  CCATGGGAAA TGTAGTTTGG AGCGAGGAGG TGGAGCCCGG CAGAGGGGGC CTGCCTTCGA
  CCCCGCCCCC AAGAGGATGC TTCATTCAAT TGGATGTCAT CTTCCCTCAT TCCCGAGCCC
  R
  GCACCGTTCT CTCCGGCCCC CTCCCCCAAA GTGCGGATCG GGCAATACCA CAGAGCCTCA
  GGACAGGGGG AAGCGCCGTC CTCTTGCCCA CGGACGGGTA AGTGGGTGGA TGCTCATTCT
  CCCACCATGC CGCCGTACGC CCTGCAGGGT TCGAGGGGAG AGTGCGAATC CTAAGTTCAG
  AGACCTGGGA CCCGTCCGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147070979	ENSMUSSNP673057	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48908210					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40759508 () rs orientation: forward

Symbol	Name	Function Class
Cdc40	cell division cycle 40	369 bp upstream
Cpgi1464	CpG island 1464	within coordinates
Rr401845	regulatory region 401845	within coordinates
Rr430263	regulatory region 430263	1959 bp distal
Rr430264	regulatory region 430264	within coordinates
Rr430265	regulatory region 430265	244 bp proximal
Rr430266	regulatory region 430266	326 bp proximal
Rr430267	regulatory region 430267	1224 bp proximal
Tssr93031	transcription start site region 93031	29 bp downstream
Tssr93032	transcription start site region 93032	4 bp downstream
Tssr93033	transcription start site region 93033	8 bp upstream
Tssr93034	transcription start site region 93034	108 bp upstream
Tssr93035	transcription start site region 93035	307 bp upstream
Tssr97391	transcription start site region 97391	382 bp upstream
Wasf1	WASP family, member 1	within coordinates