rs48908934 SNP Detail

Summary

• ID
  rs48908934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126221349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCCAGG CTCTACAAGC
  TGGGTTAGTG AGAAGGGACA AAGGCTCAGC CCAGAGCTAG AGCAAGGGCT CTTTCCTCCC
  ACTTTGGCTG AGTCTGAGTG TTGAGTAATG TTTCTGCTTA TTTCTTCCAG TATGCTCCAT
  CTTCTTCCTC TAATAAAACT CTGCCCTCAC CTCAGCTTGG GTTAGCAAAT GGCTGGCAGC
  Y
  AAGAATGGCA TTCCCCGGCC TCTCTCTTCA AGCATGTGAC TAAACTGTGA GCAGGTGCTA
  TGCGTTCTAC TATCAAATGG TATCCTTAAA AATAAATAGG GTTGAGCTGG AGAGATGGCT
  CAGCGGTTAA GAGCATTGAC TGCTTTTCAG AGGTCCTGAG TTCAACTCCC AGCAACTACA
  TGGTGGCTCA CAATCATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145875097	ENSMUSSNP4505482	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48908934					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126221349 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	1069 bp downstream
Rr655536	regulatory region 655536	467 bp distal
Rr655537	regulatory region 655537	within coordinates
Rr655538	regulatory region 655538	210 bp proximal
Tssr69045	transcription start site region 69045	727 bp upstream
Tssr69046	transcription start site region 69046	1068 bp upstream
Tssr69047	transcription start site region 69047	1270 bp upstream