rs48909596 SNP Detail

Summary

• ID
  rs48909596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98811060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACACACAC CGTGGCCATT
  CAACAGACCA ACTCACGATG GGCATTAAAC AGGGCAACGC ACACAGTGGA CATTTAAAAA
  ACAACAAAAA AACCCCACTT GAACGGATTT GTACTGAGTT CTCATCAGCT GTAGTACCGC
  ACTGTGAGAT CATCTCACAA AAGACAGAGC ATACAGAACC AAGCCCAAAC CGGGTGAGGC
  Y
  GTGCGGCTGC CTGTGGGTCA TTCGGTACCG GCTCGCGCCA GAACCCGTTG AAGCTCCAGC
  CGCGAGACCA GCCTGAGAAC TAAAACCCTT GTGCAGCCTG CGAGAGGGGA GAAGGACCCG
  AGGCTCCAAG GCGTTCGGCT GTGCACTGTC TAGCTAAGGC AGTGCTCATT CTTAACGCAC
  AACTTGAGAT AGGGTGGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147092614	ENSMUSSNP6871731	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48909596					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98811060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	within coordinates
Rr398351	regulatory region 398351	388 bp upstream
Rr595805	regulatory region 595805	504 bp distal
Rr595806	regulatory region 595806	497 bp proximal
Rr595807	regulatory region 595807	787 bp proximal
Rr595808	regulatory region 595808	1067 bp proximal
Tssr37901	transcription start site region 37901	105 bp upstream
Tssr37902	transcription start site region 37902	836 bp upstream
Tssr37903	transcription start site region 37903	901 bp upstream
Tssr37904	transcription start site region 37904	928 bp upstream
Tssr37905	transcription start site region 37905	992 bp upstream
Tssr37906	transcription start site region 37906	1022 bp upstream
Tssr37907	transcription start site region 37907	1085 bp upstream
Usp1	ubiquitin specific peptidase 1	987 bp upstream