rs48909708 SNP Detail

Summary

• ID
  rs48909708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41536356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCACAGG ATGGAGTGAT
  ACCGCCACTG TCTGCAGCTC AGCTTTCTGG CAACCTCAGA TTTTCAGTGT AGCTGAGAAC
  CAGGAGTTCG TTGGCTTCCA GGCAGTCAAA ATAAATGTCA CACAGTGTCT GTTGAGGAGC
  TAACAGACTG TTGAGAGAGG CGCTCCCTTC AGACGGTACC TAGCTCAGTG CCTGCAACTG
  Y
  AGCCTGTTAG CTTAGGTTTG ACATTGCACA TTAAACTCTG GAAGCCTGGA AAGGAAGCTT
  GCTGTACTGT GAGGTGGGAA AGCGACCTGG CCTGCTTTCT AGGCACGTTG CCTCAGACAT
  TAGGATCTGC CCTGATGTGA TGTTACCAGG GCAGTTATAC AGCTCTTTCT ATGTGCTTTA
  GAAATGATAG GTAGCAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397497	NES15899414	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48909708					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397497	NES15899414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41536356 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Jade1	jade family PHD finger 1			Intron
				Noncoding-Transcript-Variant
Rr575976	regulatory region 575976			within coordinates
Rr575977	regulatory region 575977			1704 bp proximal