rs48911260 SNP Detail

Summary

• ID
  rs48911260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83814142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGTCACA GGTCAGAACA
  CTGAGCACAG ATATATCCTC TCCTCTCTGA CCCCTACTGA TGCACATGTG ATACAGCAGC
  CACACTTGCA AACCCTCTAG GGTCAGACCA AATTGGTTTT GGTCACAGCA GGAAGCAAAC
  TAGAATAGGT CCCCTAGGAT GGCCCTCTGT TTTCATGGGT ACGTGAAAAC TACTATCTTA
  R
  CTCCCTTTTC AAAGATTGAT TTTTAATTGT GTGTGCGCAC ATCTGTGTGT GTGTTTATGT
  ACATGTGGGT ATGTTGCCTA TGGAGGCTAA AAGAGTGCAT CAGATTCTCT AGAGCTGGAG
  TTAGAAGCTG TTCTGAGCCT CCAGATATGG ATTCTGGGAA CTGAACTCTC ATCTTCTTCA
  AAGGCAGTAT TTGCTCTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60905832	NES15947406	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48911260					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905832	NES15947406	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83814142 () rs orientation: forward

Symbol	Name	Function Class
Gm23014	predicted gene, 23014	94 bp upstream
Rr632956	regulatory region 632956	136 bp distal