rs48912537 SNP Detail

Summary

• ID
  rs48912537
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43877445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTAAAGT TACGCTAGAC
  CTGATGGGGG TGGGTTGGGG TGGAGAGCAT TTCCACAATG CTCTGATTAA GCAAACTTTA
  TTTAGACTGG CCAGTCAGTT GCCTCTCCCA AAATCGGAAT TTCAGAGAGC AGATCCTTAT
  CAGCTTTTGA GACCGCTATT ATGGGGATAA TTAGCTATTA GTGCCTAGAC GAAGAGCAGC
  R
  GACTCAGGGC TCAAGGGTTT CTGTGGGGTA AAGTGTGATA AAAAACAGGT GGCAGGATAT
  TGGGCTGCAA AAAAGAAGGC AATAAAAAGA AGTGGAAGAA TAAATCATGT GAAAGAAGAG
  TCATCAGAGT ATCTGGGAAG GCATATTTTC ATAAGGCAAG AGGGCAGTCA TAAACCAGGC
  GTGGTGACAC ACACTTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62747705	NES17340479	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48912537					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747705	NES17340479	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43877445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	1769 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	1564 bp upstream
Rr527121	regulatory region 527121	1225 bp proximal
Rr527122	regulatory region 527122	1726 bp proximal
Tssr144685	transcription start site region 144685	1433 bp upstream
Tssr144686	transcription start site region 144686	1542 bp upstream
Tssr144687	transcription start site region 144687	1598 bp upstream
Tssr144688	transcription start site region 144688	1736 bp upstream
Tssr144689	transcription start site region 144689	1893 bp upstream
Tssr144690	transcription start site region 144690	1928 bp upstream
Tssr144691	transcription start site region 144691	1948 bp upstream
Tssr148130	transcription start site region 148130	1950 bp downstream