rs48913130 SNP Detail

Summary

• ID
  rs48913130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47691101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAATGAA TGTTGAGGAA
  TGAGTACAAA TTTTATCTTT TAATTTCAGA AAGTGGAAAA GAATGATATT TTTAGTTAGA
  GCGGCTCCAG TGTTCATAAG AGCAGAGTGT TCCTAGGGAG AAACTGGCAT TTCATTTCAA
  AAGTTATCCT ATAAAGAAAT TCTGTGGGGT GTAGTGACTT GTATCTGAAC CATGTGGCCA
  Y
  AAACATATTA TCAGTATGTC TGTGTGTTAA CCTATTCTTT GGTCTAGAAT GCCATTCTGC
  ATTCTTTGAG ATCACCATGT TTAGTGAAAT AAGCCTGCTC AAAGATATAG TATGGTAGGG
  TATCAGTCCT CAGCTTGTCA CTATTGAGAG GTTTTGGAGC TTTTATGAGG TGGGCTCAGG
  AGAAGGTTAT TAGAGGTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61788743	NES17713102	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48913130					SNP	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61788743	NES17713102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47691101 () rs orientation: forward

Symbol	Name	Function Class
Rr479106	regulatory region 479106	258 bp distal