rs48913573 SNP Detail

Summary

• ID
  rs48913573
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164753038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA TCACGGCTCC TTGCTCCTCC
  A
  AGAGGCATGA ATCGACCCTG GGCGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148232909	ENSMUSSNP7140441	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320607083	CHEV_2_164736618	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48913573					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164753038 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2210414I22Rik	RIKEN cDNA 2210414I22 gene			772 bp upstream
Cpgi12677	CpG island 12677			within coordinates
Rr367365	regulatory region 367365			within coordinates
Rr569758	regulatory region 569758			1452 bp distal
Rr569759	regulatory region 569759			1344 bp distal
Rr569760	regulatory region 569760			1002 bp distal
Rr569761	regulatory region 569761			within coordinates
Rr569762	regulatory region 569762			210 bp proximal
Rr569763	regulatory region 569763			277 bp proximal
Rr569764	regulatory region 569764			591 bp proximal
Rr569765	regulatory region 569765			629 bp proximal
Rr569766	regulatory region 569766			779 bp proximal
Tssr21686	transcription start site region 21686			309 bp upstream
Tssr27593	transcription start site region 27593			57 bp downstream
Tssr27594	transcription start site region 27594			100 bp downstream
Tssr27595	transcription start site region 27595			140 bp downstream
Tssr27596	transcription start site region 27596			442 bp downstream
Tssr27597	transcription start site region 27597			468 bp downstream
Zfp335	zinc finger protein 335			Intron
				mRNA-UTR
Zfp335os	zinc finger protein 335, opposite strand			315 bp upstream