rs48914125 SNP Detail

Summary

• ID
  rs48914125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46383407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAAAAG AGGGGCAAAC
  TTCCTCCTTA ACCATTCACT TTTTGGGAGG CTTCGACTTG CATGTTGGTG CAAAGCGTCC
  TGGAAACGCT AGCGCACCTG ACAACCACTG TGTCTGATAA TCCCCCTGCC TCTCACCTGG
  GCACTGCAAA CATCAAAGCA TCTCGCCTGC TTTGTCACCC CCCTTTCTTC TTTACCTTGA
  Y
  TAACTATAAT TTATAATCAC AAAAATAACT GAAATCCCAT GGCCATTTCT GGTACCGGTT
  TGTCCGGCCC CACCCAGATA CAGTTCACTA AATTGCCCCT CCAGCTCACA CCCAAGGAAA
  CTGTCCTTTT TCACCGGTGG ACCAGCCATC GCCTTCCGCA CCCTGAGTTG CCGAGCCAAT
  CCCTACAGCT CTACTGCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60312999	NES15818209	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48914125					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312999	NES15818209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46383407 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	within coordinates
Cpgi11001	CpG island 11001	within coordinates
Cpgi11002	CpG island 11002	1722 bp proximal
Gm59146	predicted gene, 59146	125 bp upstream
Rr405999	regulatory region 405999	71 bp upstream
Rr406000	regulatory region 406000	715 bp upstream
Rr406001	regulatory region 406001	1658 bp upstream
Rr548727	regulatory region 548727	within coordinates
Rr548728	regulatory region 548728	136 bp proximal
Rr548729	regulatory region 548729	760 bp proximal
Rr548730	regulatory region 548730	1438 bp proximal
Rr548731	regulatory region 548731	1773 bp proximal
Rr548732	regulatory region 548732	1881 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	1928 bp upstream
Tssr156751	transcription start site region 156751	385 bp upstream
Tssr156752	transcription start site region 156752	406 bp upstream
Tssr156753	transcription start site region 156753	1917 bp upstream
Tssr159650	transcription start site region 159650	754 bp downstream