rs48915062 SNP Detail

Summary

• ID
  rs48915062
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166555099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGCCCTG GGTCACCGCC CTGCATCCAA CCCTACGACG
  TAGCCTGCAG AACTATCCAG AGCAAGGGAC TCAACCTCTC TGGAGCCGAA CTCTTCCCTG
  G
  TCTTAAGGAT CAGAAAATAT AACCTACTGA TGAGCCCGGT AACGGCACAG TCTGCTGATA
  CCAGTGTAAG GTGCGTGGTA CACAGACGCA CTCGGACGC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148258366	ENSMUSSNP613448	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48915062					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166555099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12723	CpG island 12723	within coordinates
Gm57440	predicted gene, 57440	588 bp upstream
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	within coordinates
Rr397493	regulatory region 397493	593 bp upstream
Rr570354	regulatory region 570354	903 bp distal
Rr570355	regulatory region 570355	244 bp distal
Rr570356	regulatory region 570356	98 bp proximal
Rr570357	regulatory region 570357	643 bp proximal
Tssr21773	transcription start site region 21773	922 bp upstream
Tssr27709	transcription start site region 27709	553 bp downstream
Tssr27710	transcription start site region 27710	579 bp downstream