rs48915978 SNP Detail

Summary

• ID
  rs48915978
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28036522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC TTCCTTGGGA ATTCGAATGA
  C
  CTGTTTTTTA TGATTTATGT TGGCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134709348	ENSMUSSNP2395007	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320689841	CHEV_3_27881295	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48915978					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28036522 () rs orientation: forward

Symbol	Name	Function Class
Pld1	phospholipase D1	Intron
Rr574516	regulatory region 574516	within coordinates
Rr574517	regulatory region 574517	1373 bp proximal
Rr574518	regulatory region 574518	1811 bp proximal
Tssr28637	transcription start site region 28637	1772 bp upstream
Tssr28638	transcription start site region 28638	1899 bp upstream