rs48917553 SNP Detail

Summary

• ID
  rs48917553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:83403074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCATGCT TACTCTATAA
  CTCCAAATTC ATTCTAAAAT AATTCTTTTC AAATCTTATA GGTATTGTTT GTTTTCTACT
  CTTTTAATAT TTAATAAAAA ATACCAACTG TGTAGCTATG TATGTTCCCA CAGCATTGTG
  AACCTTGTGG GTTAGCCCAA CAGATATTAC TGATGTTTTG CCATTATTCC TTTTATGAAG
  Y
  CTGCCATCCT TGCCACACCA GAGTAACTAT CATGCAGGCA GGCATCACAT CGACACAAGC
  ATATTTTCTC TATACACTCG CCATTCAGCA GAGGGTAGCT TCATGGTTTA TAGAATTTTC
  AATTGGTAAA AGTAATTGTT CAGTGTTTCA GGCTGTGGTC TACTGGAGCA AAGGTACAAA
  AAGGAGTTAT ATGGCTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144833270	ENSMUSSNP2758323	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48917553					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:83403074 () rs orientation: forward

Symbol	Name	Function Class
Gm37989	predicted gene, 37989	1243 bp downstream
Gm69621	predicted gene, 69621	907 bp downstream