rs48917933 SNP Detail

Summary

• ID
  rs48917933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79870811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGAGAACAG CCAGGGCAGG AGACACATGG AAGCAGGAGC
  CATATTGAAC ATCTAATCTC AGCTTCCTAG GAGCAAGATG GGAGGTAGAC GCCCAGGAAG
  Y
  TCCCTGGCTG ACAACCTGGC TATCCTCACC TCCACACACA AGCAGGGCAG AGGGCAAAAC
  CAAATGTTTG TAACCTATTT GTGGTAGCAC ACACCTTTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61291564	NES16900969	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48917933					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291564	NES16900969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79870811 () rs orientation: forward

Symbol	Name	Function Class
Polr2e	polymerase (RNA) II (DNA directed) polypeptide E	976 bp downstream
Rr216689	regulatory region 216689	411 bp distal
Rr225146	regulatory region 225146	1610 bp distal
Tssr98378	transcription start site region 98378	1778 bp downstream