rs48920568 SNP Detail

Summary

• ID
  rs48920568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14620940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCACATGG TATAGATCCA
  GTTAGGATGA CTTCAAAAGG GTATCCGGGC TCAACATGTT CCTCTGAGTG GGGTGGCTGT
  CTGCACAGGA CAGAGGGCTG TTGGGAATCA TGAACTCAGA AATGGGTTCG GAGGCAGAGC
  ATTGCAGGTG TTGAGCTGTA AGGAGGGGAT GTTCATGGGA TGTCAGGAGA CGACTAAGCA
  R
  CTCTGGAATC AGCTACCCGG TCCTGGAAAG GAGTGGGCAG GAGTACAGTT AAGGGAAGTA
  GAGTCTAGCT TTCCTTGCTG CCTGTTAGAA TTCTGATGAG TTGCTATGGT TGGAGGTAGA
  GTCTGGGATT AGGAGACAGG AACATCTGGG ATAGTGGCCT GTGTGTACTT ATGAGCCAGC
  AGGAAACTGG AAACGGGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60541455	NES16554288	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48920568					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60541455	NES16554288	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14620940 () rs orientation: forward

Symbol	Name	Function Class
4930474M22Rik	RIKEN cDNA 4930474M22 gene	1736 bp upstream
Smoc2	SPARC related modular calcium binding 2	within coordinates
Tssr5014	transcription start site region 5014	1726 bp upstream
Tssr142738	transcription start site region 142738	1642 bp downstream
Tssr142739	transcription start site region 142739	1432 bp downstream
Tssr142740	transcription start site region 142740	1406 bp downstream
Tssr146495	transcription start site region 146495	1737 bp upstream