rs48920673 SNP Detail

Summary

• ID
  rs48920673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:58268182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTATGC TTTGGGGGTT
  TGATAAACAT AGCCTTCACA TGAGTGTCTA GGAAACCCCG GGGCTTCTGC TGCATGCCTT
  CAGCGCCTAA GGAAGACTTG GTTTATAAGT GGAGTACTAC CTGAGATGTT TTTTCCCCCT
  GGTACTTCAG CTGGCTTTTA AAGCACATCT AAAAACATAG GCCCTTTGCT ACATGGCCAA
  R
  GGTTAACGTC AAGGCAGTAG AGTCTGGTGG TTAGACCAAG GTCTCAGTTC CCTCACATGC
  TTACTTGGAT GCTAAACCAG CACAGCCTCT GTCACTGTGC AGGGCCTTTG AGGATTCTAC
  TAAAAACCAT CATCATGGAA CTGCATCCTG CTCTCTCATC ATCTCTCCCC TGGAGGCAAA
  AGCGGCCATC AACCAGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61405431	NES16792467	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48920673					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61405431	NES16792467	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58268182 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D9Mit232	DNA segment, Chr 9, Massachusetts Institute of Technology 232			1633 bp proximal
D9Mit232.1	DNA segment, Chr 9, Massachusetts Institute of Technology 232.1			1752 bp proximal
D9Mit248	DNA segment, Chr 9, Massachusetts Institute of Technology 248			1660 bp proximal
Gm53527	predicted gene, 53527			1560 bp upstream
Tbc1d21	TBC1 domain family, member 21			Intron
				Noncoding-Transcript-Variant