rs48921406 SNP Detail

Summary

• ID
  rs48921406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:152283174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA CCCAACCAGC AGTTCATTCA
  R
  CAAATGGTGC AGGCTCTCAC TGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134509284	ENSMUSSNP1320154	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325986994	CHEV_X_149934721	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48921406					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:152283174 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23010	CpG island 23010	865 bp distal
Rr8387	regulatory region 8387	within coordinates
Tssr162406	transcription start site region 162406	1987 bp downstream
Tssr162407	transcription start site region 162407	1954 bp downstream
Tssr162408	transcription start site region 162408	820 bp downstream
Tssr162409	transcription start site region 162409	797 bp downstream
Tssr162410	transcription start site region 162410	120 bp upstream
Tssr162411	transcription start site region 162411	153 bp upstream
Ubqln2	ubiquilin 2	within coordinates