rs48921942 SNP Detail

Summary

• ID
  rs48921942
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTTCCC TTCTAGTGGG
  AGATGTATAG GGAGGAATGT ATCTGCTTAT GAATGAATGT GAGTCCTTAG TTGCCTGGGG
  CACGTGAAGA AAAGGGGTGA ATGGAGGCGG GGCGGGGCAG GGCAGGGCAG GGTAGGGCAG
  GCTATGAGGA AGCTGGGTTT CTTTCTCACG CCTCTAATTT TTCATTGGAC AGCAGTGGCC
  W
  ATTTCAGATT CACTTTAGAC TCTGGCTGAC CTGCTGGGAG AGCAGGTGTG AGGCCACTGG
  GTTCCCAGAG CATCCTAGTA GGAAGTCTAG GAGCCCCAGC CTAGACCAGA CCAGGTCTAT
  CCAAGACAAC CAGCGAATGC CCTCTCTCCA GCCCTGCGTC CTGGTCCATC ATGACCTGAG
  TATGTGTTTG AGTATGAGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52651854	NES15472007	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		T	A	A	T		A
ss324417485	CHEV_13_70981306	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48921942					SNP	A	A	A	A	A	A	T	A	A	A	T	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651854	NES15472007	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990547 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	617 bp upstream
Cpgi5821	CpG island 5821	588 bp distal
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	712 bp upstream
Tssr123159	transcription start site region 123159	674 bp upstream
Tssr123160	transcription start site region 123160	645 bp upstream
Tssr123161	transcription start site region 123161	618 bp upstream