rs48922500 SNP Detail

Summary

• ID
  rs48922500
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110975873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGGTTAA AATAGAGCTC
  CTGTAGCCTG TTAAGCCAGA CCAAAGTTCA TCCTGGGAAC CAATGAGTTT ACTCGTCACT
  TACAGATGGA TGGTGACCCT AAAGCAGTAC ACATAGGAAG ATCAGCACCC AGCATGGACA
  ATGACTCCCT CATGGCCGTG TGCTGTAAAT ATTATCTTGG GGGATTTTAC TCTACTTAGA
  C
  CATACGGTTC CCAAATAAAA GACACAAATC TTTTAAGGCA TTAGAGCTGG ACAGGTATCA
  AGCCTCTGTG TTTGTCTATT CCCACTATTA CCTGCCATGT TACACCTGGA CTGTTCTCAT
  GGCCATGTGC GCCAACCTCA TGGCAATTCT TTCTCCCCAA GCCCTGGAGA CCTGAGGCCC
  CACCCATCTT CCTTCTGCCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss149056754	ENSMUSSNP3429145	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48922500					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110975873 () rs orientation: forward

Symbol	Name	Function Class
Hscb	HscB iron-sulfur cluster co-chaperone	1072 bp downstream
Rr616963	regulatory region 616963	490 bp distal
Rr616964	regulatory region 616964	within coordinates