rs48922699 SNP Detail

Summary

• ID
  rs48922699
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3672282 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TAGCCTTTCA GGGGCTTATT
  GTCTATCCCT TGTCTGTCCA GCAAAAGGCA GAGCCATTTC TGCATTTATT ATATGCCCAG
  AGGCCTATTT TCAGGGTTAA AGTATGAACA AAAATGCTTT GCATAGAGTG CATTATTTGA
  TAATTATATC TTTCGTGCTC TACCCCAGGA CCTAAGCCAT GAATAATGAC AAATGACATG
  S
  TCTCATAGGA AGACATAGAA AACAAATGTA ATGTATGCTG GTTCAACCAC ACCCAGCCAG
  AGATCTTTCA GTCCATAGGC ATTCTTTATT CAATTCGATA AAGCCTGGAG GAAATAAAAG
  TCTCGTGAAA AGGGATGTTA TATCTTATTG AATTCGGGGG AGTCCACTAG AATTCTTTTT
  CCTCTGCAAT ATGTAGGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52125797	NES15247331	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48922699					SNP	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52125797	NES15247331	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3672282 () rs orientation: reverse

Symbol	Name	Function Class
A330032P22Rik	RIKEN cDNA A330032P22 gene	within coordinates
Gm30164	predicted gene, 30164	within coordinates
Gm56946	predicted gene, 56946	within coordinates