rs48925056 SNP Detail

Summary

• ID
  rs48925056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127294231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGCTCA ACATTCTAAT
  ACACACAGCA TAAAACCGGG CTGCATGTTC GCACCTGTGC ACTGCACAGC TTGAAACAGA
  TCTAGAAAGA GAAATGTCGT GTCTGGGACA CGACAGCCTG CCCTGCCTTT CCCATCTTCC
  TTACTGCATC CCTTCTGTGC ACTTTGCTCC TCTTGATGGG ATTTGTATTC ACTTGTTTAT
  Y
  CTTTGAGGCT CACCTAGGAC TTGAAGGCAG AGTCCACGAG AGCACGGCCG AGCACCTTTG
  GATATTATTA TATCCAGAAA ATGTTAAAGA TCCGAGAATC GTTGCTAAGC TTCTTTGGAA
  GGTGAGCACC TTTGGATATT ATTATATCCA GAAAATGTTA AAGATCCGAG AATCGTTGCT
  AAGCTTCTTT GGAAGGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61079232	NES16586934	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48925056					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079232	NES16586934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127294231 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	1232 bp upstream
Cpgi13791	CpG island 13791	1173 bp distal
Gm64355	predicted gene, 64355	1670 bp downstream
Rr584800	regulatory region 584800	1091 bp distal
Tssr35576	transcription start site region 35576	1544 bp upstream
Tssr35577	transcription start site region 35577	1511 bp upstream
Tssr35578	transcription start site region 35578	1489 bp upstream
Tssr35579	transcription start site region 35579	1445 bp upstream