rs48925593 SNP Detail

Summary

• ID
  rs48925593
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96321882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTAAACT ACCGGTGCCA
  CTGCAGGACT GTGATCATCA GGAAGACACT CTGATGGGTT CTGAGTGGGG AGACTGGCTG
  GATGTCAGCC CAGTCCCTGT CCCATAGCCT GGCATCCCTC ATGAGGAGTC AGCTTGCCTA
  CCATCCGGCA TGCAGCAGCC AGGGGACAGG ACCAGGATTC TGCCACTCAA GGACTCTACT
  M
  CTCCATCCAG GACCACGCTT CACTTACCGG ATGTGATCAA AAGGATGCTC TAGGCTTCCT
  ACCTGTGTCT TTATGAAATT AAATGCCAGC ACCTAGACTG TATGTCCCAT GCCAGCCCTC
  TCCCATCATT CCCTGCAAGC CTCTCCACGC AGTCTCCCAC AGCTTCCTGG GATCTGTCGC
  TGTCTGTCCC CGTTCTCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61442154	NES16828139	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	A	A		C
ss323109008	CHEV_9_96340248	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48925593					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442154	NES16828139	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96321882 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22164	CpG island 22164	1610 bp distal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	988 bp downstream
Rr368835	regulatory region 368835	1506 bp downstream
Rr684964	regulatory region 684964	789 bp distal
Rr684965	regulatory region 684965	1991 bp distal
Tssr90963	transcription start site region 90963	1603 bp upstream