rs48925825 SNP Detail

Summary

• ID
  rs48925825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:75141104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGATTC CGACATAAAG
  GACATCGTTT GCCTGCCTTA TTATCTCATT CTCCAGCGGG GCTGACAGGA CAGCTGCCTG
  TTATTACGGA GCACACCAGG AAGTGATTTG CTGCCAAACA GAAAAAAGAG GGAGAGAGGG
  ATTAGTGTGC TCACGCCACA CAAACGGACC TCTTGCACCT GGTAGGCACA CAGCTCTGTT
  Y
  GTCATCTTCA TAGGGTATGT TTCTTAAATC CCATTTACAG AGAAACAAAA ACAACCCCAA
  AAGGCATCTT AATGTCATTG TAATTATGAT AAGCATCAGC AACCATTTTT GGGTTGGTTT
  TTTTTTTTTT TTTTTTTTGG TCTAGGCTAA ATGAACTGGT GTTAGCCCTC CGGTCTCATC
  ACACACTAAT CTCTTCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61181996	NES16686056	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48925825					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61181996	NES16686056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:75141104 () rs orientation: forward

Symbol	Name	Function Class
Gm52777	predicted gene, 52777	within coordinates
Rr613376	regulatory region 613376	within coordinates
Tssr46681	transcription start site region 46681	537 bp downstream