rs48927215 SNP Detail

Summary

• ID
  rs48927215
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70935007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTC AACTATGAGT AGGCTTCAAG
  K
  GGGGAGAGGA GGAAAAGGAG AAATA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146739033	ENSMUSSNP5055314	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320335453	CHEV_2_70942720	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48927215					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70935007 () rs orientation: forward

Symbol	Name	Function Class
Rr397033	regulatory region 397033	1018 bp downstream
Rr558671	regulatory region 558671	1043 bp distal
Rr558672	regulatory region 558672	186 bp distal
Rr558673	regulatory region 558673	95 bp proximal