rs48928173 SNP Detail

Summary

• ID
  rs48928173
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108216272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTATAA CCTTATGACT
  AGAAACGTGT GGGTAAAGTT ACACAATATA AGGGAGCTGT GCGTGAGCTG CTTTAGCCGT
  TGTTATTGCC AGAGGCCATC TTCCTAGGCG GGACTCTAGA CTAATTAAGA AACGGTTGAG
  TAAGACAGAG CTGGAAGATC CCCGCCTAAG CAAGCAGCTT CCTTCCAGAC TAGTGCTACA
  K
  GAGCTAGACC AGACCCGCCC TAGGCACCTC CAGGCGCTTT AGCCCGGCCG CACCCTCTTC
  CCTGTTCCTC GATGGGGGGA GGGTAGAGGC CGGATAAGGC GGGACCCTGA GACTTAGAGC
  TGGCTGCCAG CCGGAAAGAA AGCGATGCCA CGTGATCTCA GCACCATCCA GTTAAAAGGA
  GGTGCAGGGC CCTGTGAGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61449057	NES16829237	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48928173					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61449057	NES16829237	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108216272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	21 bp proximal
Gm37401	predicted gene, 37401	800 bp upstream
Gm57050	predicted gene, 57050	within coordinates
Gpx1	glutathione peroxidase 1	7 bp upstream
Rhoa	ras homolog family member A	1130 bp downstream
Rr383883	regulatory region 383883	within coordinates
Rr686784	regulatory region 686784	811 bp distal
Rr686785	regulatory region 686785	within coordinates
Rr686786	regulatory region 686786	1051 bp proximal
Tssr3010	transcription start site region 3010	669 bp upstream
Tssr87087	transcription start site region 87087	1774 bp downstream
Tssr87088	transcription start site region 87088	1592 bp downstream
Tssr87089	transcription start site region 87089	1532 bp downstream
Tssr87090	transcription start site region 87090	3 bp downstream
Tssr87091	transcription start site region 87091	within coordinates
Tssr87092	transcription start site region 87092	148 bp upstream
Tssr87093	transcription start site region 87093	170 bp upstream
Tssr87094	transcription start site region 87094	194 bp upstream
Tssr87095	transcription start site region 87095	215 bp upstream
Tssr87096	transcription start site region 87096	235 bp upstream
Tssr87097	transcription start site region 87097	703 bp upstream
Tssr87098	transcription start site region 87098	855 bp upstream
Tssr87099	transcription start site region 87099	1225 bp upstream
Tssr91519	transcription start site region 91519	803 bp downstream
Tssr91520	transcription start site region 91520	848 bp downstream
Tssr91521	transcription start site region 91521	995 bp downstream
Tssr91522	transcription start site region 91522	1053 bp downstream
Tssr91523	transcription start site region 91523	1246 bp downstream