rs48928403 SNP Detail

Summary

• ID
  rs48928403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41183591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGATCC CCTGAGCCTT
  ATTTTCAATT CCTGTCCTTC CTTTTTATAA ACATGGGGAG GTGGGAATTG CATTATTAGC
  AATTGCGCTT TGAACATGTA TGTGTTCAAG GCACTTAGCT CAGCATTGAG AATGTGACAC
  AGCCTACATC AGGACAGCTT TTTTTCTTCC CCACCGACTC TCTCAGCAAC CCTTCTCCCA
  R
  TCTCCTGCTA AAAATATTCT GCAGAGCAAA TAGATGTTGA GACAGCGTCA AACCCTGCAG
  GAATGAGTGA CAGTATAACC TGCCATGCTA AGTATCAGAT GCCTGACACG AAAAGCATTT
  GCTGACATAC ACGAGGGAGC GTCAAGGCTG GGTAGACAGG TCAGCGTCTA GGTCTCTGGG
  ACCCACCCTT CTTCATGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60399179	NES15898926	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs48928403					SNP	A	A	A	A	A	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399179	NES15898926	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41183591 () rs orientation: forward

Symbol	Name	Function Class
Gm64942	predicted gene, 64942	within coordinates
Rr575921	regulatory region 575921	211 bp distal
Rr575922	regulatory region 575922	489 bp distal