rs48928652 SNP Detail

Summary

• ID
  rs48928652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172026270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCG GATAATGTCT GAAAAAAAAA
  R
  GGGGGGTGTT CCCAGGGATG GAGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120010183	PARCsnp_1.07359	PARC_SEQ	INBRED	f	SNP			A	G
ss146183703	ENSMUSSNP2219370	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320123168	CHEV_1_174128834	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48928652					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172026270 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	1730 bp proximal
Rr32002	regulatory region 32002	1871 bp distal
Tssr10176	transcription start site region 10176	467 bp downstream
Tssr10177	transcription start site region 10177	78 bp downstream
Tssr10178	transcription start site region 10178	32 bp downstream
Tssr15149	transcription start site region 15149	939 bp upstream
Tssr15150	transcription start site region 15150	829 bp upstream
Tssr15151	transcription start site region 15151	792 bp upstream
Tssr15152	transcription start site region 15152	642 bp upstream
Tssr15153	transcription start site region 15153	624 bp upstream
Tssr15154	transcription start site region 15154	501 bp upstream
Tssr15155	transcription start site region 15155	360 bp upstream
Tssr15156	transcription start site region 15156	187 bp upstream
Tssr15157	transcription start site region 15157	144 bp upstream
Tssr15158	transcription start site region 15158	439 bp downstream
Tssr15159	transcription start site region 15159	491 bp downstream
Tssr15160	transcription start site region 15160	519 bp downstream
Tssr15161	transcription start site region 15161	1781 bp downstream
Tssr15162	transcription start site region 15162	1838 bp downstream
Tssr15163	transcription start site region 15163	1854 bp downstream