rs48931329 SNP Detail

Summary

• ID
  rs48931329
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAGTTACT TTCCTAAGTG AGCGGTCTCA CTGGCTTTGT
  TGAATTTTGA AGGCAGTCTC ACTCTGTAGC CTAGGCTGAC CTTGAACTTT AGGCTAACCT
  M
  TCACATGGGC TTCATATGTG GGATTATAGG CACGAACCTA GTTGTTCATA GGCGGGTGCC
  TTTTCTCCCT GCAAGGACTT TGGCATCTTG TTCTTGAGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132360136	ENSMUSSNP789469	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss323731049	CHEV_11_69497148	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48931329					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1353 bp distal
Rr450067	regulatory region 450067	1811 bp distal
Rr450068	regulatory region 450068	1588 bp distal
Rr450069	regulatory region 450069	1072 bp distal
Rr450070	regulatory region 450070	683 bp distal
Rr450071	regulatory region 450071	187 bp proximal
Rr450072	regulatory region 450072	1603 bp proximal
Rr450073	regulatory region 450073	1898 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	1562 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	677 bp upstream
Tssr102520	transcription start site region 102520	709 bp upstream
Tssr102521	transcription start site region 102521	750 bp upstream
Tssr102522	transcription start site region 102522	843 bp upstream
Tssr102523	transcription start site region 102523	905 bp upstream
Tssr108774	transcription start site region 108774	1842 bp upstream
Tssr108775	transcription start site region 108775	1790 bp upstream
Tssr108776	transcription start site region 108776	1750 bp upstream
Tssr108777	transcription start site region 108777	1693 bp upstream
Tssr108778	transcription start site region 108778	1665 bp upstream
Tssr108779	transcription start site region 108779	1641 bp upstream
Tssr108780	transcription start site region 108780	1567 bp upstream
Tssr108781	transcription start site region 108781	1629 bp downstream
Tssr108782	transcription start site region 108782	1691 bp downstream
Tssr108783	transcription start site region 108783	1874 bp downstream
Tssr108784	transcription start site region 108784	1891 bp downstream