rs48931394 SNP Detail

Summary

• ID
  rs48931394
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119230375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA AGTCCGAGGC TCGAGCAAAT
  A
  AAATGACCCA GGCTGGGGGG GGGGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137047112	ENSMUSSNP1216711	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48931394					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119230375 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	809 bp upstream
Cpgi22474	CpG island 22474	293 bp proximal
Gm53515	predicted gene, 53515	within coordinates
Gm69683	predicted gene, 69683	within coordinates
Rr688480	regulatory region 688480	within coordinates
Rr688481	regulatory region 688481	149 bp proximal
Rr688482	regulatory region 688482	654 bp proximal
Rr688483	regulatory region 688483	1146 bp proximal
Rr688484	regulatory region 688484	1211 bp proximal
Rr688485	regulatory region 688485	1371 bp proximal
Tssr87682	transcription start site region 87682	772 bp upstream
Tssr87683	transcription start site region 87683	847 bp upstream
Tssr87684	transcription start site region 87684	917 bp upstream