rs48934683 SNP Detail

Summary

• ID
  rs48934683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127293545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGAAAAT CGCCATCCAA
  GTACCTCTTT AGTGATGTCC CACTGAGATG GAAATTTCAT TTGTTTGTTT TTAATAGCAG
  CAAGAGCTGG AATGTAGCTC AGTATATCAC ATATTTGCTT GCTATGAATG AAGCCTTGGG
  TGCGATCCCC AGCTATGGAT AAACTAGGCG TGGCTGTGCA TGTCTGCCGT CCCAGTACTT
  R
  GGAGGCAGAG ATGGAAAAAT CAGAAGTTCA AGGTCATCTT TGGCTCTACA GTGAGTTCGA
  GGCCAGCTTG TGGTACATGG GACCATGTAT AAACAAACAA ACAAACAAAT AAATAAATAA
  AATCTAGCAA AATGACTTTC ATGAGACGAG TTGTCCTCTC TCCTGCCATT TATTTTCCAT
  TTCCTATGAA TCTCCACACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135865125	ENSMUSSNP6217193	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320954697	CHEV_3_127202814	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48934683					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127293545 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	546 bp upstream
Cpgi13791	CpG island 13791	487 bp distal
Rr584800	regulatory region 584800	405 bp distal
Tssr35576	transcription start site region 35576	858 bp upstream
Tssr35577	transcription start site region 35577	825 bp upstream
Tssr35578	transcription start site region 35578	803 bp upstream
Tssr35579	transcription start site region 35579	759 bp upstream