rs48934861 SNP Detail

Summary

• ID
  rs48934861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38704014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACGATT CTCTCTATGG
  AGCAGGCTAG GAATGCTCTC AACTGTCGGG CCCTGAGGCG CCCGAGTGCA CAGTCCTAGG
  CTTCACCCAC AACTCCCGAA AGTACCGAGA CACAGACCCA CTTACCTCTC AACACACTCT
  TGGTTTTATT TTTTTCCTGT TCCAAATAAA TTGTTCGGCT TCTCTCTTCT GTGTACGGAT
  Y
  CCTCCTCGCT GGCAAGCGTT CTGAATGGCA CTTTCTGCAC AAACAGGAAG AGCTTGTGTG
  GTCACCACCC AAGTGTGCAG GTGTTGATAG AGGATGTGAA AGTGTGGAGG CGACGGACTA
  CGGCAGACAC CCAGCCCCCT GCTCCTACCC GCCCCAGGGC AGACTGGTAA CAGAGCCTGG
  ACACACAGCT TGAGAGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60719309	NES16354838	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48934861					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719309	NES16354838	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38704014 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	within coordinates
Rr366875	regulatory region 366875	35 bp upstream
Rr409724	regulatory region 409724	1814 bp distal
Rr409725	regulatory region 409725	within coordinates
Rr409726	regulatory region 409726	12 bp proximal
Rr409727	regulatory region 409727	610 bp proximal
Rr409728	regulatory region 409728	1318 bp proximal
Tssr11346	transcription start site region 11346	within coordinates
Tssr11347	transcription start site region 11347	1 bp downstream
Tssr11348	transcription start site region 11348	14 bp downstream
Tssr11349	transcription start site region 11349	72 bp downstream
Tssr11350	transcription start site region 11350	90 bp downstream
Tssr11351	transcription start site region 11351	659 bp downstream