rs48936201 SNP Detail

Summary

• ID
  rs48936201
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70885034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA TCAGGGGGGG AAAAAAAAAA
  M
  CTCCAACAAA ACAACCAAAC AAACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146738256	ENSMUSSNP6441463	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320335121	CHEV_2_70892747	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48936201					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70885034 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			657 bp proximal
Dcaf17	DDB1 and CUL4 associated factor 17			638 bp upstream
Mettl8	methyltransferase 8, methylcytidine			Intron
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			823 bp upstream
Rr558662	regulatory region 558662			within coordinates
Rr558663	regulatory region 558663			872 bp proximal
Rr558664	regulatory region 558664			1047 bp proximal
Rr558665	regulatory region 558665			1574 bp proximal
Tssr18237	transcription start site region 18237			1041 bp upstream
Tssr24467	transcription start site region 24467			814 bp downstream
Tssr24468	transcription start site region 24468			826 bp downstream
Tssr24469	transcription start site region 24469			844 bp downstream