rs48936724 SNP Detail

Summary

• ID
  rs48936724
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:73126270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGACAGA CTGTCTTGCC
  CCTGTCTTTT CCCCTTAAAT GTGCACCCCC CACTCCTGTG TGCTGCCCAG CAATCGTCTC
  ACCAGTAAAC TGGGAGAAGC TTGGTTTTCA GTGGGGGGCT GGAAGTAGAA TGTGAGCTGC
  TTCCTGCTTC CTGCTTCCTG CTTCCTGGTT TGGTTTGATT AGGGTCAGCC CAAGGAAGAG
  K
  TAAAGACCCA ACCATCAGGA TTCCTTTACT CTTGGATTTG CAGGCAGCTT ATCCACAGGG
  CAACCATGGA CATCGGAGAG AGTGAGGCAT AGGATGTGTA CATTACCTGC ACTTTGCTTG
  GGGTTTGGGG CATCTAAGGA TGCTTGCTAG CTTCATCAGG AGGCTTCTTT AGATTTGGAG
  CTATGTCTGC TTCCAGGAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132423041	ENSMUSSNP450924	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss323746050	CHEV_11_73048946	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48936724					SNP	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:73126270 () rs orientation: forward

Symbol	Name	Function Class
Trpv1	transient receptor potential cation channel, subfamily V, member 1	within coordinates