rs48936917 SNP Detail

Summary

• ID
  rs48936917
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45110284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAGCCT CCTTGCAGGT
  TGCTCTTTTG GAATCAAAAG GCCCGAGAGT TAGGGAGAGC AAGAACTCAG GACCCAGAAA
  CAGACAGTCA GTCTTACGCA GAACAGTTGG GGCATGCAAG GCCCAACTGG ACTTTTGAGG
  ACAGGACGGG CTCATACCAG GGTCTAATCT CAGAAGCCTG GGAAGAGAGC AAAGGGAAAC
  S
  AGCCCAATCA TGAAAAGGGG CTAAAGGAAG AAACAGTAAG ATGGGTCAAG GGAGCCACGC
  GGAGCAGGAA GAATGTGCTG CTGAGGCCCT TAGTGGAAGG GGTAGCAAGG CCAGTTCTGC
  TGAGTCACGC TGAGCTCAGC TAGGCAGTGG GGCGGGCGGC AGGCCACACC CGGGCTGACA
  GCCAGAAGTC CCCCGGCTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149135504	ENSMUSSNP261053	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48936917					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45110284 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	837 bp downstream
Cpgi19060	CpG island 19060	1430 bp distal
Cpgi19061	CpG island 19061	726 bp distal
Ftl1	ferritin light polypeptide 1	976 bp upstream
Gm10252	predicted gene 10252	560 bp downstream
Gm73429	predicted gene, 73429	within coordinates
Gm73431	predicted gene, 73431	149 bp upstream
Rr380754	regulatory region 380754	within coordinates
Rr646450	regulatory region 646450	486 bp distal
Rr646451	regulatory region 646451	751 bp distal
Rr646452	regulatory region 646452	within coordinates
Rr646453	regulatory region 646453	160 bp proximal
Rr646454	regulatory region 646454	593 bp proximal
Tssr66541	transcription start site region 66541	1172 bp downstream
Tssr66542	transcription start site region 66542	204 bp upstream
Tssr72395	transcription start site region 72395	1435 bp upstream
Tssr72396	transcription start site region 72396	1403 bp upstream
Tssr72397	transcription start site region 72397	1129 bp upstream
Tssr72398	transcription start site region 72398	979 bp upstream
Tssr72399	transcription start site region 72399	62 bp downstream
Tssr72400	transcription start site region 72400	100 bp downstream