rs48937244 SNP Detail

Summary

• ID
  rs48937244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17463090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTGCAC CTGTATAGTG
  GCTGTGGCTT GAATGACTCT CAAAGTTACT TCTATACATA CCTCTATGTC CATTATCGAA
  TCAGCTCTTC TGACAATTGG AAAGAACTCC TATTCTAAAA GGCAATGGAT TCCTTAGATC
  CTTTCACCTT ATTGTATCCT TGTAGGGAAA TGCAAAATTT TAGAAACGAT TCTAATAAAC
  R
  AATCTTCCTA AGTAAATCCT TTTCAATTTC TTTTAATATT CGAGATTTGA ACTTATGTGT
  TGGATTTGTT AGTTGCTATT TGTCTATGTA ACCGCCTTGT GTCCATTTGT CTATTTAATT
  ACCCTGTGTC CAGCTATGAG GAAAAAAAAG TGAAAATTAA CCAGAAGCCT CCCCTGGGTT
  AAACTCCTGG GGTTCTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014984	ENSMUSSNP3987367	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48937244					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17463090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	224 bp proximal
Met	met proto-oncogene	709 bp upstream
Rr626799	regulatory region 626799	219 bp proximal
Rr626800	regulatory region 626800	383 bp proximal
Rr626801	regulatory region 626801	426 bp proximal
Rr626802	regulatory region 626802	958 bp proximal
Tssr55050	transcription start site region 55050	341 bp upstream
Tssr55051	transcription start site region 55051	464 bp upstream
Tssr55052	transcription start site region 55052	658 bp upstream
Tssr55053	transcription start site region 55053	735 bp upstream
Tssr55054	transcription start site region 55054	794 bp upstream
Tssr55055	transcription start site region 55055	810 bp upstream
Tssr55056	transcription start site region 55056	836 bp upstream
Tssr55057	transcription start site region 55057	1001 bp upstream
Tssr55058	transcription start site region 55058	1041 bp upstream
Tssr55059	transcription start site region 55059	1080 bp upstream