rs48937421 SNP Detail

Summary

• ID
  rs48937421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:23500286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATGAAGC AAACCCTTGC
  CTTTCTCAAA ATATCTTTGG TTTTAAAATA CTTAAAAACA TCCAGAGGAT CTTAAGTGTT
  AGAAATTTGG TTTAAGATGA ACTCATTCCG ATTTAGGTCA ATTAAAATAC AAAAAGAAAA
  ATCATACTTC ACTTTCTTTT TTAAATAACA TAAAGAGCAA AACTTGCAGT GCCTGTATGT
  Y
  TGAAGAACTG GTTCTATGTC TAGCTGTTTA TGACTTTTTG AACTCAACTC CCTTTCCTTA
  CCAAATAGCA ACTTGGAAAA AGGAGTTTTG AAGTTCACTG AAGCTAGTAA CTCCTCAAAT
  TGAGAGTCTG ATTTTTCTGC CCTCCTCGCC CCCAGCCTTG AGCAGGCTGA TTCAGACCTT
  GTGTTTGCCA CAGCTGGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61361343	NES16736239	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48937421					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61361343	NES16736239	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:23500286 () rs orientation: forward

Symbol	Name	Function Class
Gm39311	predicted gene, 39311	1779 bp downstream
Rr383080	regulatory region 383080	within coordinates