rs48938082 SNP Detail

Summary

• ID
  rs48938082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:120756948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATACTGA AAGAGAGCAC
  GTGGATCCAT AATCTAGACT AGCGCGGTAA TGGAACTTGG GAATGAAAAA TTAATGTATG
  GGTAGAGAAC ACTAGACTCC AGGAGGAGAG TTTCCTTAAA ACTCTTTTGC CTCACGAGTG
  ACTTTTAAGC CTTTCGGCTT GTCCAGTTGA CTCAACTGGA GAGCGTAGCA CATGGGAAAT
  R
  TAAATGAGGA AAATACCTAA TAAAAAAGGA AAAAAGGAAA AAAAAATAGA GATTTCAACT
  GGCCTTGATG AAAACAGTAT GATAATACCT GAAGTTATTA GAAATAGGAT TTCTGCATAA
  CCTATGTATA ATTCTTAGAT GTACCCAAAG GAAACAAAAT GATTATCCTC TTATGATACT
  TGCATATACA TGTTCATTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134396219	ENSMUSSNP2406331	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48938082					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:120756948 () rs orientation: forward

Symbol	Name	Function Class
Rr395603	regulatory region 395603	within coordinates