rs48938133 SNP Detail

Summary

• ID
  rs48938133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153062800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCTGAAGT GAGTAACACC AAGTGGGGGA
  GGGGATGCAA ATCTTGGCTT ATCCCACACT GTCCTGGGAA CTTCTCCTAC AGTGAATAAT
  GCAGAAGTGA CTGTCAGAGA AGGCTCTTAA ATCCTGCTAT AGACTTAGGA TTTACTAGTA
  Y
  TTATGTAGAC ACAACGTATC CATTACAACC AATAACCACT TCTTTTCCTC ATGGTAAGGA
  CAGCAGAGGC CCTAAATAAA TACCTAGTCA CTGACTAAAT GAATGACTGT ACCATAGATA
  GTTCCGTAGC TTAACACTCT AAGATAACTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60822401	NES16493734	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T		T	C		T
ss320071243	CHEV_1_155034184	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs48938133					SNP	T	T	T	C	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822401	NES16493734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153062800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	587 bp distal
Lamc2	laminin, gamma 2	607 bp upstream
Rr13130	regulatory region 13130	201 bp proximal
Rr25076	regulatory region 25076	1192 bp proximal
Rr28719	regulatory region 28719	399 bp distal
Tssr14250	transcription start site region 14250	998 bp upstream
Tssr14251	transcription start site region 14251	962 bp upstream
Tssr14252	transcription start site region 14252	932 bp upstream
Tssr14253	transcription start site region 14253	918 bp upstream
Tssr14254	transcription start site region 14254	899 bp upstream